6DDE	Membrane Protein	date	May 10, 2018
title	Mu Opioid Receptor-Gi Protein Complex
authors	A.Koehl, H.Hu, S.Maeda, A.Manglik, Y.Zhang, B.K.Kobilka, G.Skiniot W.I.Weis
compound		source
Molecule: Guanine Nucleotide-Binding Protein G(I) Subunit A Chain: A Synonym: Adenylate Cyclase-Inhibiting G Alpha Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gnai1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: High Five Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvl1392
Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1; Chain: B Synonym: Transducin Beta Chain 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gnb1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: High Five Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvl1392
Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2; Chain: C Synonym: G Gamma-I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gng2 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: High Five Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvl1392
Molecule: Scfv16 Chain: E Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: Mu-Type Opioid Receptor Chain: R Synonym: Mor-1 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Oprm1, Mor, Oprm Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Damgo Chain: D Engineered: Yes Other_details: Analogue Of Enkephalin		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.50 Å
ligand	DAL, ETA, MEA	enzyme
Gene Ontology	Chain Function Process Component A B G-protein coupled acetylchol... C R
Primary reference	Structure of the micro-opioid receptor-Gi protein complex., Koehl A, Hu H, Maeda S, Zhang Y, Qu Q, Paggi JM, Latorraca NR, Hilger D, Dawson R, Matile H, Schertler GFX, Granier S, Weis WI, Dror RO, Manglik A, Skiniotis G, Kobilka BK, Nature. 2018 Jun 13. pii: 10.1038/s41586-018-0219-7. doi:, 10.1038/s41586-018-0219-7. PMID:29899455

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk] Biological Unit Coordinates (6dde.pdb1.gz) 155 Kb LPC: Ligand-Protein Contacts for 6DDE CSU: Contacts of Structural Units for 6DDE Retrieve 6DDE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DDE from S2C, [Save to disk]

View 6DDE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DDE

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6dde from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dde_R] [6dde_C] [6dde_E] [6dde_B] [6dde_D] [6dde_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DDE

Community annotation for 6DDE at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---