6DGF		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Yeast Two-Hybrid Analysis for Ubiquitin Variant Inhibitors of Human Deubiquitinases., Pascoe N, Seetharaman A, Teyra J, Manczyk N, Satori MA, Tjandra D, Makhnevych T, Schwerdtfeger C, Brasher BB, Moffat J, Costanzo M, Boone C, Sicheri F, Sidhu SS, J Mol Biol. 2019 Mar 15;431(6):1160-1171. doi: 10.1016/j.jmb.2019.02.007. Epub, 2019 Feb 11. PMID:30763569

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (6dgf.pdb1.gz) 132 Kb LPC: Ligand-Protein Contacts for 6DGF CSU: Contacts of Structural Units for 6DGF Structure Factors (313 Kb) Retrieve 6DGF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DGF from S2C, [Save to disk]

View 6DGF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dgf_A] [6dgf_B] SWISS-PROT database:

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