6DK3 Transferase date May 28, 2018
title Human Mitochondrial Serine Hydroxymethyltransferase 2
authors A.Dong, H.Wu, H.Zeng, P.Loppnau, M.Sundstrom, C.H.Arrowsmith, A.M. A.Bochkarev, A.N.Plotnikov, Structural Genomics Consortium (S
compound source
Molecule: Serine Hydroxymethyltransferase, Mitochondrial
Chain: A
Synonym: Shmt,Glycine Hydroxymethyltransferase,Serine Methy
Ec: 2.1.2.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shmt2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.034 75.029 75.199 90.00 108.77 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand UNX enzyme Transferase E.C.2.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • translation repressor activi...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (6dk3.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (6dk3.pdb2.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 6DK3
  • CSU: Contacts of Structural Units for 6DK3
  • Structure Factors (303 Kb)
  • Retrieve 6DK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DK3 from S2C, [Save to disk]
    • View 6DK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DK3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dk3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DK3
  • Community annotation for 6DK3 at PDBWiki (http://pdbwiki.org)

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