6DKK Toxin date May 29, 2018
title Structure Of Bont
authors K.Lam, R.Jin
compound source
Molecule: Botulinum Neurotoxin Type A
Chain: A, B
Synonym: Bonta,Bontoxilysin-A,Botox
Ec: 3.4.24.69
Engineered: Yes
 Organism_scientific: Clostridium Botulinum A Str. Atcc 1939
Organism_taxid: 441770
Gene: Bota, Atx, Bna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.209 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
167.659 167.659 222.834 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand PO4 enzyme Hydrolase E.C.3.4.24.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA viral-fusion-peptide-like molecular switch drives membrane insertion of botulinum neurotoxin A1., Lam KH, Guo Z, Krez N, Matsui T, Perry K, Weisemann J, Rummel A, Bowen ME, Jin R, Nat Commun. 2018 Dec 18;9(1):5367. doi: 10.1038/s41467-018-07789-4. PMID:30560862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (6dkk.pdb1.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 6DKK
  • CSU: Contacts of Structural Units for 6DKK
  • Structure Factors (944 Kb)
  • Retrieve 6DKK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DKK from S2C, [Save to disk]
    • View 6DKK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DKK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dkk_B] [6dkk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DKK
  • Community annotation for 6DKK at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science