6DMB Protein Binding date Jun 04, 2018
title Cryo-Em Structure Of Human Ptch1
authors N.Yan, X.Gong, H.W.Qian
compound source
Molecule: Protein Patched Homolog 1
Chain: A
Synonym: Ptc1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptch1, Ptch
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand NAG, Y01 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the recognition of Sonic Hedgehog by human Patched1., Gong X, Qian H, Cao P, Zhao X, Zhou Q, Lei J, Yan N, Science. 2018 Jun 28. pii: science.aas8935. doi: 10.1126/science.aas8935. PMID:29954986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (6dmb.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 6DMB
  • CSU: Contacts of Structural Units for 6DMB
  • Retrieve 6DMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DMB from S2C, [Save to disk]
    • View 6DMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DMB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dmb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DMB
  • Community annotation for 6DMB at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science