6DME		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CCC, G4P, GTP, MG, TL	enzyme
Primary reference	ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands., Peselis A, Serganov A, Nat Chem Biol. 2018 Sep;14(9):887-894. doi: 10.1038/s41589-018-0114-4. Epub 2018 , Aug 17. PMID:30120360

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (6dme.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 6DME CSU: Contacts of Structural Units for 6DME Structure Factors (209 Kb) Retrieve 6DME in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DME from S2C, [Save to disk]

View 6DME in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dme_A] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---