6DMO Protein Binding date Jun 05, 2018
title Cryo-Em Structure Of Human Ptch1 With Three Mutations L282qt500fp504l
authors N.Yan, X.Gong, H.W.Qian
compound source
Molecule: Protein Patched Homolog 1
Chain: A
Synonym: Ptc1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptch1, Ptch
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.10 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the recognition of Sonic Hedgehog by human Patched1., Gong X, Qian H, Cao P, Zhao X, Zhou Q, Lei J, Yan N, Science. 2018 Jun 28. pii: science.aas8935. doi: 10.1126/science.aas8935. PMID:29954986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (6dmo.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 6DMO
  • CSU: Contacts of Structural Units for 6DMO
  • Retrieve 6DMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DMO from S2C, [Save to disk]
    • View 6DMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DMO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dmo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DMO
  • Community annotation for 6DMO at PDBWiki (http://pdbwiki.org)

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