6DMS date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEndo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-L-fucosidases from GH29., Vickers C, Liu F, Abe K, Salama-Alber O, Jenkins ML, Springate CM, Burke JE, Withers SG, Boraston AB, J Biol Chem. 2018 Oct 3. pii: RA118.005134. doi: 10.1074/jbc.RA118.005134. PMID:30282808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (6dms.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 6DMS
  • CSU: Contacts of Structural Units for 6DMS
  • Structure Factors (420 Kb)
  • Retrieve 6DMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DMS from S2C, [Save to disk]
  • View 6DMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dms_A]
  • SWISS-PROT database:

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