6DNB	Transferase	date	Jun 06, 2018
title	Crystal Structure Of T110a:S256a Mutant Human Glutamate Oxal Transaminase 1 (Got1)
authors	Z.Assar, M.C.Holt, A.J.Stein, L.Lairson, C.A.Lyssiotis
compound		source
Molecule: Aspartate Aminotransferase, Cytoplasmic Chain: A Synonym: Caspat,Cysteine Aminotransferase,Cytoplasmic,Cyste Transaminase,Ccat,Glutamate Oxaloacetate Transaminase 1,Tra A; Ec: 2.6.1.1,2.6.1.3 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Got1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 65 2 2	R_factor 0.179 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.085 84.085 210.128 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	GOL, PG4, PO4	enzyme	Transferase E.C.2.6.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors., Holt MC, Assar Z, Beheshti Zavareh R, Lin L, Anglin J, Mashadova O, Haldar D, Mullarky E, Kremer DM, Cantley LC, Kimmelman AC, Stein AJ, Lairson LL, Lyssiotis CA, Biochemistry. 2018 Nov 12. doi: 10.1021/acs.biochem.8b00914. PMID:30365304

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (6dnb.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 6DNB CSU: Contacts of Structural Units for 6DNB Structure Factors (1355 Kb) Retrieve 6DNB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DNB from S2C, [Save to disk]

View 6DNB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DNB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dnb_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DNB

Community annotation for 6DNB at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---