6DO1 Membrane Protein date Jun 08, 2018
title Structure Of Nanobody-Stabilized Angiotensin II Type 1 Recep To S1i8
authors L.M.Wingler, C.Mcmahon, D.P.Staus, R.J.Lefkowitz, A.C.Kruse
compound source
Molecule: Type-1 Angiotensin II Receptor,Soluble Cytochrome Fusion Protein;
Chain: A, B
Synonym: At1ar,At1br,Angiotensin II Type-1 Receptor,At1,Cyt 562,At1ar,At1br,Angiotensin II Type-1 Receptor,At1;
Engineered: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Agtr1, Agtr1a, Agtr1b, At2r1, At2r1b, Cybc
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f

Molecule: Nanobody Nb.At110i1
Chain: C, D, E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Angiotensin-Like Peptide S1i8
Chain: G, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 2
R_factor 0.305 R_Free 0.359
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.682 227.796 41.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistinctive Activation Mechanism for Angiotensin Receptor Revealed by a Synthetic Nanobody., Wingler LM, McMahon C, Staus DP, Lefkowitz RJ, Kruse AC, Cell. 2019 Jan 24;176(3):479-490.e12. doi: 10.1016/j.cell.2018.12.006. Epub 2019 , Jan 10. PMID:30639100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (6do1.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (6do1.pdb2.gz) 83 Kb
  • CSU: Contacts of Structural Units for 6DO1
  • Structure Factors (831 Kb)
  • Retrieve 6DO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DO1 from S2C, [Save to disk]
  • View 6DO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6do1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6do1_C] [6do1_B] [6do1_F] [6do1_G] [6do1_A] [6do1_D] [6do1_H] [6do1_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DO1
  • Community annotation for 6DO1 at PDBWiki (http://pdbwiki.org)

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