6DSU Transferase Dna date Jun 14, 2018
title Bst Dna Polymerase I Pre-Insertion Complex Structure
authors N.Chim, L.N.Jackson, J.C.Chaput
compound source
Molecule: Dna (5'-D(Gpcpgpaptpcpapcpgpt)-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Papcpgptpgpaptpcpgpcpa)-3')
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Polymerase I
Chain: A
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Pola
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.440 93.386 104.959 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand DZ4, MG, SO4 enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (6dsu.pdb1.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 6DSU
  • CSU: Contacts of Structural Units for 6DSU
  • Structure Factors (884 Kb)
  • Retrieve 6DSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DSU from S2C, [Save to disk]
  • View 6DSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DSU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dsu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dsu_P] [6dsu_A] [6dsu_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DSU
  • Community annotation for 6DSU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science