6DWF Hydrolase date Jun 26, 2018
title Crystal Structure Of Complex Of Bbki Mutant, L55r With Bovin
authors M.Li, A.Wlodawer, A.Gustchina
compound source
Molecule: Cationic Trypsin
Chain: A, B, C, D, E, F
Fragment: Residues 24-246
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Kunitz-Type Inihibitor
Chain: G, H, I, J, K, L
Fragment: Residues 19-181
Engineered: Yes
Mutation: Yes

Organism_scientific: Bauhinia Bauhinioides
Organism_taxid: 166014
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 64
R_factor 0.196 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
207.303 207.303 107.167 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.94 Å
ligand
enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L


Primary referenceCrystal structures of the complex of a kallikrein inhibitor from Bauhinia bauhinioides with trypsin and modeling of kallikrein complexes., Li M, Srp J, Gustchina A, Dauter Z, Mares M, Wlodawer A, Acta Crystallogr D Struct Biol. 2019 Jan 1;75(Pt 1):56-69. doi:, 10.1107/S2059798318016492. Epub 2019 Jan 7. PMID:30644845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (738 Kb) [Save to disk]
  • Biological Unit Coordinates (6dwf.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (6dwf.pdb2.gz) 125 Kb
  • Biological Unit Coordinates (6dwf.pdb3.gz) 126 Kb
  • Biological Unit Coordinates (6dwf.pdb4.gz) 126 Kb
  • Biological Unit Coordinates (6dwf.pdb5.gz) 127 Kb
  • Biological Unit Coordinates (6dwf.pdb6.gz) 127 Kb
  • CSU: Contacts of Structural Units for 6DWF
  • Structure Factors (5346 Kb)
  • Retrieve 6DWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DWF from S2C, [Save to disk]
  • View 6DWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DWF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dwf_E] [6dwf_D] [6dwf_A] [6dwf_J] [6dwf_B] [6dwf_L] [6dwf_K] [6dwf_C] [6dwf_H] [6dwf_F] [6dwf_G] [6dwf_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DWF
  • Community annotation for 6DWF at PDBWiki (http://pdbwiki.org)

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