6DWM Oxidoreductase date Jun 26, 2018
title Structure Of Human Cytochrome P450 1a1 With Bergamottin
authors A.G.Bart, E.E.Scott
compound source
Molecule: Cytochrome P450 1a1
Chain: A, B, C, D
Fragment: Unp Residues 35-512
Synonym: Cypia1,Cytochrome P450 Form 6,Cytochrome P450-C,Cy P450-P1;
Ec: 1.14.14.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp1a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.330 194.758 236.137 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand CPS, GOL, HEM, HJJ enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • demethylase activity
  • vitamin D 24-hydroxylase act...


    • Primary referenceStructures of human cytochrome P450 1A1 with bergamottin and erlotinib reveal active-site modifications for binding of diverse ligands., Bart AG, Scott EE, J Biol Chem. 2018 Sep 25. pii: RA118.005588. doi: 10.1074/jbc.RA118.005588. PMID:30254074
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (599 Kb) [Save to disk]
  • Biological Unit Coordinates (6dwm.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (6dwm.pdb2.gz) 153 Kb
  • Biological Unit Coordinates (6dwm.pdb3.gz) 148 Kb
  • Biological Unit Coordinates (6dwm.pdb4.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 6DWM
  • CSU: Contacts of Structural Units for 6DWM
  • Structure Factors (2491 Kb)
  • Retrieve 6DWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DWM from S2C, [Save to disk]
    • View 6DWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DWM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dwm_A] [6dwm_D] [6dwm_C] [6dwm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DWM
  • Community annotation for 6DWM at PDBWiki (http://pdbwiki.org)

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