6E59 Signaling Protein date Jul 19, 2018
title Crystal Structure Of The Human Nk1 Tachykinin Receptor
authors J.Yin, L.Clark, K.Chapman, Z.Shao, D.Borek, Q.Xu, J.Wang, D.M.Rosen
compound source
Molecule: Substance-P Receptor, Glga Glycogen Synthase, Sub Receptor Chimera;
Chain: A
Fragment: Receptor (Unp Residues 1-227, 238-346) With Inter Glycogen Synthase (Unp Residues 218-413);
Synonym: Spr,Nk-1 Receptor,Nk-1r,Tachykinin Receptor 1,Glyc Synthase;
Engineered: Yes
Organism_scientific: Homo Sapiens, Pyrococcus Abyssi (Strai Orsay);
Organism_common: Human
Organism_taxid: 9606, 272844
Strain: Ge5 Orsay
Gene: Tacr1, Nk1r, Tac1r, Pab2292
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_common: Fall Armyworm
Expression_system_taxid: 1491790
symmetry Space Group: C 1 2 1
R_factor 0.248 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.789 61.975 142.942 90.00 100.18 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand L76 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the human NK1 tachykinin receptor., Yin J, Chapman K, Clark LD, Shao Z, Borek D, Xu Q, Wang J, Rosenbaum DM, Proc Natl Acad Sci U S A. 2018 Dec 11. pii: 1812717115. doi:, 10.1073/pnas.1812717115. PMID:30538204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (6e59.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 6E59
  • CSU: Contacts of Structural Units for 6E59
  • Structure Factors (256 Kb)
  • Retrieve 6E59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E59 from S2C, [Save to disk]
  • View 6E59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E59
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e59_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E59
  • Community annotation for 6E59 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science