6EEC Transcription Dna date Aug 13, 2018
title Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermedi Complex With Rbpacard And Ap3 Promoter Captured By Corallo
authors S.A.Darst, E.A.Campbell, H.Boyaci Selcuk, J.Chen
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpob, Samea2682864_01701
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoz, Ers007672_03979, Ers007703_04032, Ers007720_047 Ers027652_00548, Ers027654_02543, Ers027656_03959, Ers12436
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Polymerase Sigma Factor Siga
Chain: F
Synonym: Sigma-A
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Siga, Mysa, Rpod, Rpov
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Polymerase-Binding Protein Rbpa
Chain: J
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rbpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (65-Mer)
Chain: O
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Dna (63-Mer)
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Rna Polymerase-Binding Transcription Factor Card
Chain: M
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Card
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.55 Å
ligand C0L, MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


    • J


    M


    Primary referenceStructures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding., Boyaci H, Chen J, Jansen R, Darst SA, Campbell EA, Nature. 2019 Jan;565(7739):382-385. doi: 10.1038/s41586-018-0840-5. Epub 2019 Jan, 9. PMID:30626968
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk]
  • Biological Unit Coordinates (6eec.pdb1.gz) 534 Kb
  • LPC: Ligand-Protein Contacts for 6EEC
  • CSU: Contacts of Structural Units for 6EEC
  • Retrieve 6EEC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EEC from S2C, [Save to disk]
    • View 6EEC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EEC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eec_D] [6eec_P] [6eec_M] [6eec_J] [6eec_C] [6eec_A] [6eec_B] [6eec_E] [6eec_O] [6eec_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EEC
  • Community annotation for 6EEC at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science