6EF8 Electron Transport date Aug 16, 2018
title Cryo-Em Of The Omcs Nanowires From Geobacter Sulfurreducens
authors F.Wang, Y.Gu, E.H.Egelman, N.S.Malvankar
compound source
Molecule: C-Type Cytochrome Omcs
Chain: A, B, C, D, E, F, G
Synonym: Outer Membrane Cytochrome S
Organism_scientific: Geobacter Sulfurreducens (Strain Atcc Dsm 12127 Pca);
Organism_taxid: 243231
Strain: Atcc 51573 Dsm 12127 Pca
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceStructure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers., Wang F, Gu Y, O'Brien JP, Yi SM, Yalcin SE, Srikanth V, Shen C, Vu D, Ing NL, Hochbaum AI, Egelman EH, Malvankar NS, Cell. 2019 Apr 4;177(2):361-369.e10. doi: 10.1016/j.cell.2019.03.029. PMID:30951668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (435 Kb) [Save to disk]
  • Biological Unit Coordinates (6ef8.pdb1.gz) 414 Kb
  • CSU: Contacts of Structural Units for 6EF8
  • Retrieve 6EF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EF8 from S2C, [Save to disk]
  • View 6EF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EF8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ef8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ef8_D] [6ef8_G] [6ef8_A] [6ef8_E] [6ef8_C] [6ef8_B] [6ef8_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EF8
  • Community annotation for 6EF8 at PDBWiki (http://pdbwiki.org)

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