6EFK Ligase date Aug 16, 2018
title Crystal Structure Of The Human Chip Tpr Domain In Complex Wi Acetylated Hsp70 Peptide
authors K.Basu, M.Ravalin, M.F.Bohn, C.S.Craik, J.E.Gestwicki
compound source
Molecule: E3 Ubiquitin-Protein Ligase Chip
Chain: A, B
Synonym: Antigen Ny-Co-7,Cll-Associated Antigen Kw-8,Carbox Of Hsp70-Interacting Protein,Ring-Type E3 Ubiquitin Transfe Stip1 Homology And U Box-Containing Protein 1;
Ec: 2.3.2.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stub1, Chip, Pp1131
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Ace-Ile-Glu-Glu-Val-Asp
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.709 70.342 77.072 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Transferase E.C.2.3.2.27 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (6efk.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (6efk.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 6EFK
  • Structure Factors (1118 Kb)
  • Retrieve 6EFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EFK from S2C, [Save to disk]
  • View 6EFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EFK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6efk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6efk_B] [6efk_A] [6efk_D] [6efk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EFK
  • Community annotation for 6EFK at PDBWiki (http://pdbwiki.org)

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