6ERP Transcription date Oct 18, 2017
title Structure Of The Human Mitochondrial Transcription Initiatio At The Lsp Promoter
authors H.S.Hillen, Y.I.Morozov, A.Sarfallah, D.Temiakov, P.Cramer
compound source
Molecule: Transcription Factor A, Mitochondrial
Chain: C, G
Synonym: Mttfa,Mitochondrial Transcription Factor 1,Mttf1, Transcription Factor 6,Tcf-6,Transcription Factor 6-Like 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tfam, Tcf6, Tcf6l2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2 Plyss

Molecule: Non-Template Dna
Chain: D, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Template Dna
Chain: E, I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna-Directed Rna Polymerase, Mitochondrial
Chain: A, B
Synonym: Mtrpol
Ec: 2.7.7.6
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polrmt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril

Molecule: Dimethyladenosine Transferase 2, Mitochondrial
Chain: F, J
Synonym: Hepatitis C Virus Ns5a-Transactivated Protein 5,Hc Transactivated Protein 5,Mitochondrial 12s Rrna Dimethylase Mitochondrial Transcription Factor B2,Mttfb2,S-Adenosylmeth N',N'-Adenosyl(Rrna) Dimethyltransferase 2;
Ec: 2.1.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tfb2m, Ns5atp5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
symmetry Space Group: P 1 21 1
R_factor 0.270 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.910 197.030 137.210 90.00 99.87 90.00
method X-Ray Diffractionresolution 4.50 Å
ligand
enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, J


Primary referenceStructural Basis of Mitochondrial Transcription Initiation., Hillen HS, Morozov YI, Sarfallah A, Temiakov D, Cramer P, Cell. 2017 Nov 16;171(5):1072-1081.e10. doi: 10.1016/j.cell.2017.10.036. PMID:29149603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1244 Kb) [Save to disk]
  • Biological Unit Coordinates (6erp.pdb1.gz) 616 Kb
  • Biological Unit Coordinates (6erp.pdb2.gz) 618 Kb
  • CSU: Contacts of Structural Units for 6ERP
  • Structure Factors (270 Kb)
  • Retrieve 6ERP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ERP from S2C, [Save to disk]
  • View 6ERP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ERP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6erp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6erp_D] [6erp_I] [6erp_E] [6erp_H] [6erp_A] [6erp_F] [6erp_C] [6erp_J] [6erp_B] [6erp_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ERP
  • Community annotation for 6ERP at PDBWiki (http://pdbwiki.org)

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