6EUB Signaling Protein date Oct 30, 2017
title The Fibrinogen-Like Domain Of Human Angptl4
authors E.I.Biterova, M.Esmaeeli, H.I.Alanen, M.Saaranen, L.W.Ruddock
compound source
Molecule: Angiopoietin-Related Protein 4
Chain: A
Synonym: Angiopoietin-Like Protein 4,Hepatic Fibrinogenang Related Protein,Hfarp;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Angptl4, Arp4, Hfarp, Pgar, Pp1158, Psec0166, Unq171
Expression_system: Escherichia Coli Str. K-12 Substr. Mds42
Expression_system_taxid: 1110693
symmetry Space Group: C 2 2 21
R_factor 0.201 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.020 133.770 39.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 1PE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of Angptl3 and Angptl4, modulators of triglyceride levels and coronary artery disease., Biterova E, Esmaeeli M, Alanen HI, Saaranen M, Ruddock LW, Sci Rep. 2018 Apr 30;8(1):6752. doi: 10.1038/s41598-018-25237-7. PMID:29713054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (6eub.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 6EUB
  • CSU: Contacts of Structural Units for 6EUB
  • Structure Factors (135 Kb)
  • Retrieve 6EUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EUB from S2C, [Save to disk]
    • View 6EUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EUB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eub_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EUB
  • Community annotation for 6EUB at PDBWiki (http://pdbwiki.org)

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