6F0X Cell Cycle date Nov 20, 2017
title Cryo-Em Structure Of Trip13 In Complex With Atp Gamma S, P31 Mad2 And Cdc20
authors C.Alfieri, L.Chang, D.Barford
compound source
Molecule: Pachytene Checkpoint Protein 2 Homolog
Chain: A, B, C, D, E, F
Synonym: Human Papillomavirus Type 16 E1 Protein-Binding Pr Hpv16 E1 Protein-Binding Protein,Thyroid Hormone Receptor I 13,Thyroid Receptor-Interacting Protein 13,Trip-13;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trip13, Pch2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Mad2l1-Binding Protein
Chain: P
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cell Division Cycle Protein 20 Homolog
Chain: Q
Synonym: P55cdc
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc20
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Mitotic Spindle Assembly Checkpoint Protein Mad2a
Chain: Z
Synonym: Hsmad2,Mitotic Arrest Deficient 2-Like Protein 1,M Protein 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mad2l1, Mad2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.60 Å
ligand AGS enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D
  • transcription cofactor activ...


  • P


    Q


    Z


    Primary referenceMechanism for remodelling of the cell cycle checkpoint protein MAD2 by the ATPase TRIP13., Alfieri C, Chang L, Barford D, Nature. 2018 Jul;559(7713):274-278. doi: 10.1038/s41586-018-0281-1. Epub 2018 Jul, 4. PMID:29973720
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • Biological Unit Coordinates (6f0x.pdb1.gz) 367 Kb
  • LPC: Ligand-Protein Contacts for 6F0X
  • CSU: Contacts of Structural Units for 6F0X
  • Retrieve 6F0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F0X from S2C, [Save to disk]
  • View 6F0X in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 6F0X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6f0x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f0x_P] [6f0x_C] [6f0x_Z] [6f0x_B] [6f0x_Q] [6f0x_F] [6f0x_E] [6f0x_D] [6f0x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6F0X
  • Community annotation for 6F0X at PDBWiki (http://pdbwiki.org)

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