6FBU Hydrolase date Dec 19, 2017
title Crystal Structure Of The Dna Repair Enzyme Endonuclease-Viii From E. Coli (E2q) In Complex With Ap-Site Containing Dna S
authors S.Pomyalov, S.Lansky, G.Golan, D.O.Zharkov, A.P.Grollman, G.Shoha
compound source
Molecule: Endonuclease 8
Chain: A
Synonym: Dna Glycosylaseap Lyase Nei,Dna-(Apurinic Or Apyr Site) Lyase Nei,Endonuclease Viii;
Ec: 3.2.2.-,
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Nei, B0714, Jw0704
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Pgpgpcptptpcpaptpcpcptpg)-3
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpcpapgpgpap(Ped)Pgpapapgp
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 2 2
R_factor 0.241 R_Free 0.281
length a length b length c angle alpha angle beta angle gamma
75.340 75.340 164.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACT, PED, SO4, ZN enzyme Hydrolase E.C.3.2.2 BRENDA
  • endonuclease activity

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (6fbu.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 6FBU
  • CSU: Contacts of Structural Units for 6FBU
  • Structure Factors (359 Kb)
  • Retrieve 6FBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FBU from S2C, [Save to disk]
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  • Visual 3D analysis of 6FBU
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fbu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fbu_A] [6fbu_B] [6fbu_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FBU
  • Community annotation for 6FBU at PDBWiki (http://pdbwiki.org)

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