6FKQ	Signaling Protein	date	Jan 24, 2018
title	The Crystal Structure Of A Fragment Of Netrin-1 In Complex W Fragment Of Draxin
authors	T.Bhowmick, R.Meijers
compound		source
Molecule: Netrin-1 Chain: A Synonym: Epididymis Tissue Protein Li 131p Engineered: Yes Other_details: Netrin-1 Is A Prototypical Axon Guidance Cue Binds To The Receptor Deleted In Colorectal Cancer (Dcc).;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ntn1, Ntn1l Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: 293t17 [Hek 293t17] Atcc C Expression_system_tissue: Kidney Expression_system_plasmid: Pxlg
Molecule: Draxin Chain: B Fragment: Unp Residues 225-243 Synonym: Dorsal Inhibitory Axon Guidance Protein,Dorsal Rep Axon Guidance Protein,Neucrin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Draxin, C1orf187, Psec0258, Unq3119pro10268 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: (Hek 293t17] Atcc Crl-11268 Expression_system_tissue: Kidney Expression_system_plasmid: Pxlg
symmetry	Space Group: P 64 2 2	R_factor 0.235 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.794 130.794 183.870 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.07 Å
ligand	CA, GOL, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC., Liu Y, Bhowmick T, Liu Y, Gao X, Mertens HDT, Svergun DI, Xiao J, Zhang Y, Wang JH, Meijers R, Neuron. 2018 Feb 20. pii: S0896-6273(18)30109-0. doi:, 10.1016/j.neuron.2018.02.010. PMID:29503192

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (6fkq.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 6FKQ CSU: Contacts of Structural Units for 6FKQ Structure Factors (373 Kb) Retrieve 6FKQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6FKQ from S2C, [Save to disk]

View 6FKQ in 3D

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Visual 3D analysis of 6FKQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fkq_B] [6fkq_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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