6FM9 Transferase date Jan 30, 2018
title Crystal Structure Of Human Udp-N-Acetylglucosamine-Dolichyl- N-Acetylglucosaminephosphotransferase (Dpagt1)
authors A.C.W.Pike, Y.Y.Dong, A.Chu, A.Tessitore, S.Goubin, L.Dong, S.Mukh P.Mahajan, R.Chalk, G.Berridge, D.Wang, K.Kupinska, K.Belaya, D.B N.Burgess-Brown, A.M.Edwards, C.H.Arrowsmith, C.Bountra, E.P.Ca Structural Genomics Consortium (Sgc)
compound source
Molecule: Udp-N-Acetylglucosamine--Dolichyl-Phosphate N- Acetylglucosaminephosphotransferase;
Chain: A
Synonym: Glcnac-1-P Transferase,Gpt,N-Acetylglucosamine-1-P Transferase;
Ec: 2.7.8.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpagt1, Dpagt2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 65 2 2
R_factor 0.249 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.799 103.799 241.099 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.60 Å
ligand P6L enzyme Transferase E.C.2.7.8.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (6fm9.pdb1.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 6FM9
  • CSU: Contacts of Structural Units for 6FM9
  • Structure Factors (293 Kb)
  • Retrieve 6FM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FM9 from S2C, [Save to disk]
  • View 6FM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FM9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fm9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FM9
  • Community annotation for 6FM9 at PDBWiki (http://pdbwiki.org)

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