6FO6 CryoEM structure of bovine cytochrome bc1 in complex with the anti-malarial inhibitor SCR0911 date
authors Johnson, R.M., Amporndanai, K., Neill, P.M.O., Fishwick, C.W.G., Jamson, A.H., Rawson, S.D., Hasnain, S.S., Antonyuk, S.V., Muench, S.P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.10
ligand DY2, HEC, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A


O, B


Q, D


S, F


T, G


Primary referenceX-ray and cryo-EM structures of inhibitor-bound cytochrome bc1 complexes for structure-based drug discovery., Amporndanai K, Johnson RM, O'Neill PM, Fishwick CWG, Jamson AH, Rawson S, Muench SP, Hasnain SS, Antonyuk SV, IUCrJ. 2018 Feb 20;5(Pt 2):200-210. doi: 10.1107/S2052252518001616. eCollection, 2018 Mar 1. PMID:29765610
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (567 Kb) [Save to disk]
  • Biological Unit Coordinates (6fo6.pdb1.gz) 555 Kb
  • LPC: Ligand-Protein Contacts for 6FO6
  • CSU: Contacts of Structural Units for 6FO6
  • Retrieve 6FO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FO6 from S2C, [Save to disk]
    • View 6FO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6FO6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fo6 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fo6_B] [6fo6_G] [6fo6_A] [6fo6_P] [6fo6_N] [6fo6_C] [6fo6_W] [6fo6_F] [6fo6_H] [6fo6_E] [6fo6_Q] [6fo6_O] [6fo6_S] [6fo6_U] [6fo6_D] [6fo6_T] [6fo6_R] [6fo6_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6FO6
  • Community annotation for 6FO6 at PDBWiki (http://pdbwiki.org)

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