6FO6 Membrane Protein date Feb 06, 2018
title Cryoem Structure Of Bovine Cytochrome Bc1 In Complex With Th Malarial Inhibitor Scr0911
authors R.M.Johnson, K.Amporndanai, P.M.O'Neill, C.W.G.Fishwick, A.H.Jam S.D.Rawson, S.S.Hasnain, S.V.Antonyuk, S.P.Muench
compound source
Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: E, R
Synonym: Complex III Subunit 5,Cytochrome B-C1 Complex Subu Rieske Iron-Sulfur Protein,Risp,Rieske Protein Uqcrfs1,Ubiq Cytochrome C Reductase Iron-Sulfur Subunit;
Ec: 1.10.2.2
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 1, Mitochondrial
Chain: A, N
Synonym: Complex III Subunit 1,Core Protein I,Ubiquinol-Cyt Reductase Complex Core Protein 1;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 2, Mitochondrial
Chain: B, O
Synonym: Complex III Subunit 2,Core Protein II,Ubiquinol-Cy Reductase Complex Core Protein 2;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B
Chain: C, P
Synonym: Complex III Subunit 3,Complex III Subunit III,Cyto C1 Complex Subunit 3,Ubiquinol-Cytochrome-C Reductase Compl Cytochrome B Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C1, Heme Protein, Mitochondrial
Chain: D, Q
Synonym: Complex III Subunit 4,Complex III Subunit Iv,Cytoc Complex Subunit 4,Ubiquinol-Cytochrome-C Reductase Complex C1 Subunit,Cytochrome C-1;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 7
Chain: F, S
Synonym: Complex III Subunit 7,Complex III Subunit Vii,Qp-C Ubiquinol-Cytochrome C Reductase Complex 14 Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 8
Chain: G, T
Synonym: Complex III Subunit 8,Complex III Subunit Viii,Ubi Cytochrome C Reductase Complex 9.5 Kda Protein,Ubiquinol-Cy Reductase Complex Ubiquinone-Binding Protein Qp-C;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 6, Mitochondrial
Chain: H, U
Synonym: Complex III Subunit 6,Complex III Subunit Viii,Cyt Non-Heme 11 Kda Protein,Mitochondrial Hinge Protein,Ubiquin Cytochrome C Reductase Complex 11 Kda Protein;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome B-C1 Complex Subunit 9
Chain: J, W
Synonym: Complex III Subunit 9,Complex III Subunit X,Cytoch Non-Heme 7 Kda Protein,Ubiquinol-Cytochrome C Reductase Com Kda Protein
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.10 Å
ligand DY2, HEC, HEM enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A


O, B


Q, D


S, F


T, G


Primary referenceX-ray and cryo-EM structures of inhibitor-bound cytochrome bc1 complexes for structure-based drug discovery., Amporndanai K, Johnson RM, O'Neill PM, Fishwick CWG, Jamson AH, Rawson S, Muench SP, Hasnain SS, Antonyuk SV, IUCrJ. 2018 Feb 20;5(Pt 2):200-210. doi: 10.1107/S2052252518001616. eCollection, 2018 Mar 1. PMID:29765610
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (567 Kb) [Save to disk]
  • Biological Unit Coordinates (6fo6.pdb1.gz) 555 Kb
  • LPC: Ligand-Protein Contacts for 6FO6
  • CSU: Contacts of Structural Units for 6FO6
  • Retrieve 6FO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FO6 from S2C, [Save to disk]
    • View 6FO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6FO6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fo6_B] [6fo6_G] [6fo6_A] [6fo6_P] [6fo6_N] [6fo6_C] [6fo6_W] [6fo6_F] [6fo6_H] [6fo6_E] [6fo6_Q] [6fo6_O] [6fo6_S] [6fo6_U] [6fo6_D] [6fo6_T] [6fo6_R] [6fo6_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6FO6
  • Community annotation for 6FO6 at PDBWiki (http://pdbwiki.org)

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