6FOG Hydrolase Lyase date Feb 07, 2018
title X-Ray Structure Of Homo Sapiens Fumarylacetoacetate Hydrolas Containing Protein 1 (Fahd1) In Complex With Inhibitor Oxal 1.94a Resolution.
authors A.Naschberger, A.K.H.Weiss
compound source
Molecule: Acylpyruvase Fahd1, Mitochondrial
Chain: A, G, F, D, B, C, H, E
Synonym: Fumarylacetoacetate Hydrolase Domain-Containing Pr Fah Domain-Containing Protein 1,Oxaloacetate Decarboxylase, Decarboxylase,Yisk-Like Protein;
Ec: 3.7.1.5,4.1.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fahd1, C16orf36, Yiskl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.984 116.679 125.753 90.00 89.94 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand
enzyme Hydrolase E.C.3.7.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural basis for the bi-functionality of human oxaloacetate decarboxylase FAHD1., Weiss AKH, Naschberger A, Loeffler JR, Gstach H, Bowler MW, Holzknecht M, Cappuccio E, Pittl A, Etemad S, Dunzendorfer-Matt T, Scheffzek K, Liedl KR, Jansen-Durr P, Biochem J. 2018 Oct 22. pii: BCJ20180750. doi: 10.1042/BCJ20180750. PMID:30348641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (569 Kb) [Save to disk]
  • Biological Unit Coordinates (6fog.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (6fog.pdb2.gz) 145 Kb
  • Biological Unit Coordinates (6fog.pdb3.gz) 146 Kb
  • Biological Unit Coordinates (6fog.pdb4.gz) 144 Kb
  • CSU: Contacts of Structural Units for 6FOG
  • Structure Factors (6300 Kb)
  • Retrieve 6FOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FOG from S2C, [Save to disk]
  • View 6FOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FOG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fog from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fog_E] [6fog_H] [6fog_B] [6fog_F] [6fog_A] [6fog_C] [6fog_D] [6fog_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FOG
  • Community annotation for 6FOG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science