6FQM Isomerase date Feb 14, 2018
title 3.06a Complex Of S.Aureus Gyrase With Imidazopyrazinone T1 A
authors B.D.Bax, T.Germe, E.Basque, A.Maxwell
compound source
Molecule: Dna Gyrase Subunit B
Chain: B, b, d
Ec: 5.99.1.3
Engineered: Yes
Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3
Organism_taxid: 158879
Gene: Gyrb, Sa0005
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Gyrase Subunit A
Chain: A, C, a, c
Ec: 5.99.1.3
Engineered: Yes

Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3
Organism_taxid: 158879
Gene: Gyra, Sa0006
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Gyrase Subunit B
Chain: D
Ec: 5.99.1.3
Engineered: Yes

Organism_scientific: Staphylococcus Aureus Subsp. Aureus N3
Organism_taxid: 158879
Gene: Gyrb, Sa0005
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Gpapgpapgptpaptgpgpcpcpaptpapcptpcpt)-
Chain: E, F, e, f
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.340 171.710 124.870 90.00 102.86 90.00
method X-Ray Diffractionresolution 3.06 Å
ligand E32, GOL, MN, PTR, SO4 enzyme Isomerase E.C.5.99.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, c, a, C


b, D, d, B


Primary referenceA new class of antibacterials, the imidazopyrazinones, reveal structural transitions involved in DNA gyrase poisoning and mechanisms of resistance., Germe T, Voros J, Jeannot F, Taillier T, Stavenger RA, Bacque E, Maxwell A, Bax BD, Nucleic Acids Res. 2018 Mar 10. pii: 4925761. doi: 10.1093/nar/gky181. PMID:29538767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (889 Kb) [Save to disk]
  • Biological Unit Coordinates (6fqm.pdb1.gz) 442 Kb
  • Biological Unit Coordinates (6fqm.pdb2.gz) 437 Kb
  • LPC: Ligand-Protein Contacts for 6FQM
  • CSU: Contacts of Structural Units for 6FQM
  • Structure Factors (2949 Kb)
  • Retrieve 6FQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FQM from S2C, [Save to disk]
  • View 6FQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FQM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fqm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fqm_e] [6fqm_c] [6fqm_F] [6fqm_B] [6fqm_A] [6fqm_a] [6fqm_D] [6fqm_E] [6fqm_d] [6fqm_C] [6fqm_f] [6fqm_b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FQM
  • Community annotation for 6FQM at PDBWiki (http://pdbwiki.org)

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