6FT7 Transferase date Feb 20, 2018
title Crystal Structure Of Clk3 In Complex With Compound 8a
authors A.Chaikuad, A.Walter, F.Von Delft, C.Bountra, C.H.Arrowsmith, A.M C.Kunick, S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Dual Specificity Protein Kinase Clk3
Chain: A, B
Synonym: Cdc-Like Kinase 3
Ec: 2.7.12.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clk3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.760 116.830 69.910 90.00 92.75 90.00
method X-Ray Diffractionresolution 2.02 Å
ligand E6Q, EDO, IOD enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular structures of cdc2-like kinases in complex with a new inhibitor chemotype., Walter A, Chaikuad A, Helmer R, Loaec N, Preu L, Ott I, Knapp S, Meijer L, Kunick C, PLoS One. 2018 May 3;13(5):e0196761. doi: 10.1371/journal.pone.0196761., eCollection 2018. PMID:29723265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (6ft7.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (6ft7.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 6FT7
  • CSU: Contacts of Structural Units for 6FT7
  • Structure Factors (4340 Kb)
  • Retrieve 6FT7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FT7 from S2C, [Save to disk]
  • View 6FT7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FT7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ft7_B] [6ft7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FT7
  • Community annotation for 6FT7 at PDBWiki (http://pdbwiki.org)

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