6FUF Signaling Protein date Feb 27, 2018
title Crystal Structure Of The Rhodopsin-Mini-Go Complex
authors C.J.Tsai, T.Weinert, J.Muehle, F.Pamula, R.Nehme, T.Flock, P.Nogl P.C.Edwards, B.Carpenter, T.Gruhl, P.Ma, X.Deupi, J.Standfuss, C. G.F.X.Schertler
compound source
Molecule: Rhodopsin
Chain: A
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Rho
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Guanine Nucleotide-Binding Protein G(O) Subunit A
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnao1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.257 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.359 151.359 96.652 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.12 Å
ligand NAG, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structure of rhodopsin in complex with a mini-Go sheds light on the principles of G protein selectivity., Tsai CJ, Pamula F, Nehme R, Muhle J, Weinert T, Flock T, Nogly P, Edwards PC, Carpenter B, Gruhl T, Ma P, Deupi X, Standfuss J, Tate CG, Schertler GFX, Sci Adv. 2018 Sep 19;4(9):eaat7052. doi: 10.1126/sciadv.aat7052. eCollection 2018, Sep. PMID:30255144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (6fuf.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 6FUF
  • CSU: Contacts of Structural Units for 6FUF
  • Structure Factors (395 Kb)
  • Retrieve 6FUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FUF from S2C, [Save to disk]
  • View 6FUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FUF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fuf_B] [6fuf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FUF
  • Community annotation for 6FUF at PDBWiki (http://pdbwiki.org)

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