6FYK	Transferase	date	Mar 12, 2018
title	X-Ray Structure Of Clk2-Kd(136-496)Indazole1 At 2.39a
authors	J.Kallen
compound		source
Molecule: Dual Specificity Protein Kinase Clk2 Chain: A, B, C Fragment: Kinase Domain Synonym: Cdc-Like Kinase 2 Ec: 2.7.12.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Clk2 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 32 2 1	R_factor 0.195 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.633 95.633 222.858 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	EAZ	enzyme	Transferase E.C.2.7.12.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	X-ray structures and feasibility assessment of CLK2 inhibitors for Phelan McDermid syndrome., Lerchner AM, Kallen J, Bergsdorf C, Arnaud B, Bernhard M, Brichet M, Cobos-Correa A, Elhajouji A, Freuler F, Galimberti I, Guibourdenche C, Haenni S, Holzinger S, Hunziker J, Izaac A, Kaufmann M, Leder L, Martus HJ, von Matt P, Polyakov V, Roethlisberger P, Roma G, Stiefl N, Uteng M, ChemMedChem. 2018 Jul 9. doi: 10.1002/cmdc.201800344. PMID:29985556

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (6fyk.pdb1.gz) 63 Kb Biological Unit Coordinates (6fyk.pdb2.gz) 63 Kb Biological Unit Coordinates (6fyk.pdb3.gz) 62 Kb LPC: Ligand-Protein Contacts for 6FYK CSU: Contacts of Structural Units for 6FYK Structure Factors (1379 Kb) Retrieve 6FYK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6FYK from S2C, [Save to disk]

View 6FYK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6FYK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fyk_B] [6fyk_A] [6fyk_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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