6G0L Motor Protein date Mar 19, 2018
title Structure Of Two Molecules Of The Chromatin Remodelling Enzy Bound To A Nucleosome
authors R.Sundaramoorthy, T.Owen-Hughes, D.G.Norman, A.Hughes
compound source
Molecule: Histone H3
Chain: A, E
Engineered: Yes
Other_details: Histone H3 Sequence From X. Laevis. The N-Te Region From 1-39 Is Not Resolved.;
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h3g, H3l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes
Other_details: Histone H4 Sequence From X. Laevis. The N-Te Region From 1-19 Is Not Resolved.;

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: C
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: D, H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18028549mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (176-Mer)
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (177-Mer)
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Chromo Domain-Containing Protein 1
Chain: M, W
Synonym: Atp-Dependent Helicase Chd1
Ec: 3.6.4.-
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292
Gene: Chd1, Yer164w, Sygp-Orf4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.00 Å
ligand ADP, BEF enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


W, M


Primary referenceStructure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome., Sundaramoorthy R, Hughes AL, El-Mkami H, Norman DG, Ferreira H, Owen-Hughes T, Elife. 2018 Aug 6;7. pii: 35720. doi: 10.7554/eLife.35720. PMID:30079888
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (539 Kb) [Save to disk]
  • Biological Unit Coordinates (6g0l.pdb1.gz) 524 Kb
  • LPC: Ligand-Protein Contacts for 6G0L
  • CSU: Contacts of Structural Units for 6G0L
  • Retrieve 6G0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G0L from S2C, [Save to disk]
  • View 6G0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6G0L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6g0l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g0l_W] [6g0l_E] [6g0l_A] [6g0l_B] [6g0l_D] [6g0l_C] [6g0l_F] [6g0l_G] [6g0l_H] [6g0l_M] [6g0l_I] [6g0l_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6G0L
  • Community annotation for 6G0L at PDBWiki (http://pdbwiki.org)

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