6GBU Endocytosis date Apr 16, 2018
title Crystal Structure Of The Second Sh3 Domain Of Fchsd2 (Sh3-2) Complex With The Fourth Sh3 Domain Of Itsn1 (Sh3d)
authors L.Almeida-Souza, R.Frank, J.Garcia-Nafria, A.Colussi, N.Gunaward C.M.Johnson, M.Yu, G.Howard, B.Andrews, Y.Vallis, H.T.Mcmahon
compound source
Molecule: F-Bar And Double Sh3 Domains Protein 2
Chain: A, C, E, G
Synonym: Carom,Sh3 Multiple Domains Protein 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fchsd2, Kiaa0769, Sh3md3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta

Molecule: Intersectin-1
Chain: B, D, F, H
Synonym: Sh3 Domain-Containing Protein 1a,Sh3p17
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itsn1, Itsn, Sh3d1a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
symmetry Space Group: I 21 3
R_factor 0.208 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
186.984 186.984 186.984 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.44 Å
Primary referenceA Flat BAR Protein Promotes Actin Polymerization at the Base of Clathrin-Coated Pits., Almeida-Souza L, Frank RAW, Garcia-Nafria J, Colussi A, Gunawardana N, Johnson CM, Yu M, Howard G, Andrews B, Vallis Y, McMahon HT, Cell. 2018 Jun 4. pii: S0092-8674(18)30597-X. doi: 10.1016/j.cell.2018.05.020. PMID:29887380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (6gbu.pdb1.gz) 73 Kb
  • CSU: Contacts of Structural Units for 6GBU
  • Structure Factors (605 Kb)
  • Retrieve 6GBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GBU from S2C, [Save to disk]
  • View 6GBU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GBU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gbu_E] [6gbu_G] [6gbu_F] [6gbu_B] [6gbu_H] [6gbu_A] [6gbu_C] [6gbu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GBU
  • Community annotation for 6GBU at PDBWiki (http://pdbwiki.org)

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