6GED Cell Adhesion date Apr 26, 2018
title Adhesin Domain Of Prgb From Enterococcus Faecalis Bound To D
authors A.Schmitt, R.P.A.Berntsson
compound source
Molecule: Prgb
Chain: A
Engineered: Yes
Organism_scientific: Enterococcus Faecalis
Organism_common: Streptococcus Faecalis
Organism_taxid: 1351
Gene: Prgb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'-D(Pgpgpgpcpgpgpcpcpcpg)-3')
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpgpgpgpcpcpgpcpcpc)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.017 93.026 99.097 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand EDO, NA enzyme
Primary referencePrgB Promotes Aggregation, Biofilm Formation, and Conjugation through DNA Binding and Compaction., Schmitt A, Jiang K, Camacho MI, Jonna VR, Hofer A, Westerlund F, Christie PJ, Berntsson RP, Mol Microbiol. 2018 May 3. doi: 10.1111/mmi.13980. PMID:29723434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (6ged.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 6GED
  • CSU: Contacts of Structural Units for 6GED
  • Structure Factors (185 Kb)
  • Retrieve 6GED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GED from S2C, [Save to disk]
  • View 6GED in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GED
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ged_A] [6ged_D] [6ged_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GED
  • Community annotation for 6GED at PDBWiki (http://pdbwiki.org)

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