6GFB Antiviral Protein date Apr 29, 2018
title Structure Of The Btbpoz Domain Of Human 90k
authors G.Ssebyatika, T.Krey
compound source
Molecule: Galectin-3-Binding Protein
Chain: A, B
Synonym: Basement Membrane Autoantigen P105,Lectin Galactos Binding Soluble 3-Binding Protein,Mac-2-Binding Protein,Mac Tumor-Associated Antigen 90k;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals3bp, M2bp
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider 2
symmetry Space Group: P 31 2 1
R_factor 0.208 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.340 70.340 105.510 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.08 Å
ligand ZN enzyme
Primary referenceThe Antiviral Activity of the Cellular Glycoprotein LGALS3BP/90K is Species-Specific., Lodermeyer V, Ssebyatika G, Passos V, Ponnurangam A, Malassa A, Ewald E, Sturzel CM, Kirchhoff F, Rotger M, Falk CS, Telenti A, Krey T, Goffinet C, J Virol. 2018 May 9. pii: JVI.00226-18. doi: 10.1128/JVI.00226-18. PMID:29743357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (6gfb.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 6GFB
  • CSU: Contacts of Structural Units for 6GFB
  • Structure Factors (193 Kb)
  • Retrieve 6GFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GFB from S2C, [Save to disk]
    • View 6GFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GFB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gfb_A] [6gfb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GFB
  • Community annotation for 6GFB at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science