6GFK Transferase date Apr 30, 2018
title Delta-N Mettl16 Mtase Domain
authors K.M.Chen, M.Mendel, D.Homolka, A.A.Mccarthy, R.S.Pillai
compound source
Molecule: U6 Small Nuclear Rna (Adenine-(43)-N(6))-Methyltr
Chain: A, B, C
Synonym: Methyltransferase 10 Domain-Containing Protein, Methyltransferase-Like Protein 16,N6-Adenosine-Methyltransf Mettl16;
Ec: 2.1.1.346,2.1.1.62
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mettl16, Mett10d
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Petm-11-Sumo
symmetry Space Group: P 31 2 1
R_factor 0.195 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.768 133.768 78.701 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SAH, SO4 enzyme Transferase E.C.2.1.1.346 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceMethylation of Structured RNA by the m(6)A Writer METTL16 Is Essential for Mouse Embryonic Development., Mendel M, Chen KM, Homolka D, Gos P, Pandey RR, McCarthy AA, Pillai RS, Mol Cell. 2018 Sep 5. pii: S1097-2765(18)30638-5. doi:, 10.1016/j.molcel.2018.08.004. PMID:30197299
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (6gfk.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (6gfk.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (6gfk.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (6gfk.pdb4.gz) 453 Kb
  • LPC: Ligand-Protein Contacts for 6GFK
  • CSU: Contacts of Structural Units for 6GFK
  • Structure Factors (1236 Kb)
  • Retrieve 6GFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GFK from S2C, [Save to disk]
  • View 6GFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GFK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gfk_A] [6gfk_B] [6gfk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GFK
  • Community annotation for 6GFK at PDBWiki (http://pdbwiki.org)

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