6GJE Protein Transport date May 16, 2018
title Structure Of The Amnionless(20-357)-Cubilin(36-135) Complex
authors C.Larsen, A.Etzerodt, M.Madsen, K.Skjoedt, S.K.Moestrup, C.B.F.An
compound source
Molecule: Protein Amnionless
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Amn, Unq513pro1028
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Shufflet7
Expression_system_plasmid: Pacycduet-1

Molecule: Cubilin
Chain: B, C, D
Synonym: 460 Kda Receptor,Intestinal Intrinsic Factor Recep Intrinsic Factor-Cobalamin Receptor,Intrinsic Factor-Vitami Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cubn, Ifcr
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Shufflet7
Expression_system_plasmid: Pacycduet-1
symmetry Space Group: I 2 2 2
R_factor 0.211 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.280 158.840 237.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceStructural assembly of the megadalton-sized receptor for intestinal vitamin B12 uptake and kidney protein reabsorption., Larsen C, Etzerodt A, Madsen M, Skjodt K, Moestrup SK, Andersen CBF, Nat Commun. 2018 Dec 6;9(1):5204. doi: 10.1038/s41467-018-07468-4. PMID:30523278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (6gje.pdb1.gz) 193 Kb
  • CSU: Contacts of Structural Units for 6GJE
  • Structure Factors (498 Kb)
  • Retrieve 6GJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GJE from S2C, [Save to disk]
  • View 6GJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GJE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gje_B] [6gje_D] [6gje_C] [6gje_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GJE
  • Community annotation for 6GJE at PDBWiki (http://pdbwiki.org)

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