6GRY Hydrolase date Jun 12, 2018
title Glucuronoyl Esterase From Solibacter Usitatus.
authors L.Lo Leggio, J.Larsbrink, R.Meland Knudsen, S.Mazurkewich, J.C.N Poulsen
compound source
Molecule: Putative Acetyl Xylan Esterase
Chain: A
Ec: 3.1.1.-
Engineered: Yes
 Organism_scientific: Candidatus Solibacter Usitatus
Organism_taxid: 332163
Gene: Acid_4275
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 43 21 2
R_factor 0.188 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.579 54.579 284.112 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, PEG, PG4, PGE enzyme Hydrolase E.C.3.1.1 BRENDA
Primary referenceBiochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion., Arnling Baath J, Mazurkewich S, Knudsen RM, Poulsen JN, Olsson L, Lo Leggio L, Larsbrink J, Biotechnol Biofuels. 2018 Aug 1;11:213. doi: 10.1186/s13068-018-1213-x., eCollection 2018. PMID:30083226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (6gry.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6GRY
  • CSU: Contacts of Structural Units for 6GRY
  • Structure Factors (958 Kb)
  • Retrieve 6GRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GRY from S2C, [Save to disk]
    • View 6GRY in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 6GRY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GRY
  • Community annotation for 6GRY at PDBWiki (http://pdbwiki.org)

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