6H3C Signaling Protein date Jul 18, 2018
title Cryo-Em Structure Of The Brisc Complex Bound To Shmt2
authors R.D.Bunker, J.Rabl, N.H.Thoma
compound source
Molecule: Brisc Complex Subunit Abraxas 2
Chain: A, F
Synonym: Abraxas Brother Protein 1,Protein Fam175b
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abraxas2, Abro1, Fam175b, Kiaa0157
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five

Molecule: Lys-63-Specific Deubiquitinase Brcc36
Chain: B, G
Synonym: Brca1-A Complex Subunit Brcc36,Brca1brca2-Contain Complex Subunit 3,Brca1brca2-Containing Complex Subunit 36 Complex Subunit Brcc36;
Ec: 3.4.19.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brcc3, Brcc36, C6.1a, Cxorf53
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five

Molecule: Brisc And Brca1-A Complex Member 2
Chain: C, H
Synonym: Brca1-A Complex Subunit Bre,Brca1brca2-Containing Subunit 45,Brain And Reproductive Organ-Expressed Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Babam2, Brcc45, Bre
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five

Molecule: Brisc And Brca1-A Complex Member 1
Chain: D, I
Synonym: Mediator Of Rap80 Interactions And Targeting Subun Kda,New Component Of The Brca1-A Complex;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Babam1, C19orf62, Merit40, Nba1, Hspc142
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Serine Hydroxymethyltransferase, Mitochondrial
Chain: E, J
Synonym: Shmt,Glycine Hydroxymethyltransferase,Serine Methy
Ec: 2.1.2.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shmt2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ZN enzyme Hydrolase E.C.3.4.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, G
  • enzyme regulator activity


    • D, I


    F, A


    H, C

  • BRISC complex
    • J, E
  • translation repressor activi...


    • Primary referenceStructural Basis of BRCC36 Function in DNA Repair and Immune Regulation., Rabl J, Bunker RD, Schenk AD, Cavadini S, Gill ME, Abdulrahman W, Andres-Pons A, Luijsterburg MS, Ibrahim AFM, Branigan E, Aguirre JD, Marceau AH, Guerillon C, Bouwmeester T, Hassiepen U, Peters AHFM, Renatus M, Gelman L, Rubin SM, Mailand N, van Attikum H, Hay RT, Thoma NH, Mol Cell. 2019 Jun 19. pii: S1097-2765(19)30435-6. doi:, 10.1016/j.molcel.2019.06.002. PMID:31253574
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (884 Kb) [Save to disk]
  • Biological Unit Coordinates (6h3c.pdb1.gz) 872 Kb
  • LPC: Ligand-Protein Contacts for 6H3C
  • CSU: Contacts of Structural Units for 6H3C
  • Retrieve 6H3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H3C from S2C, [Save to disk]
    • View 6H3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6H3C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h3c_H] [6h3c_E] [6h3c_C] [6h3c_D] [6h3c_I] [6h3c_J] [6h3c_B] [6h3c_A] [6h3c_G] [6h3c_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6H3C
  • Community annotation for 6H3C at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science