6I1P Membrane Protein date Oct 29, 2018
title Respiratory Complex I From Thermus Thermophilus With Bound N
authors J.Gutierrez-Fernandez, G.S.Minhas, L.A.Sazanov
compound source
Molecule: Nadh-Quinone Oxidoreductase Subunit 1
Chain: 1, B
Synonym: Nadh Dehydrogenase I Chain 1,Ndh-1 Subunit 1
Ec: 1.6.5.11
Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 2
Chain: 2, C
Synonym: Nadh Dehydrogenase I Chain 2,Ndh-1 Subunit 2
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 3
Chain: 3, D
Synonym: Nadh Dehydrogenase I Chain 3,Ndh-1 Subunit 3
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 4
Chain: 4, E
Synonym: Nadh Dehydrogenase I Chain 4,Ndh-1 Subunit 4
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 5
Chain: 5, F
Synonym: Nadh Dehydrogenase I Chain 5,Ndh-1 Subunit 5
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 6
Chain: 6, G
Synonym: Nadh Dehydrogenase I Subunit 6,Ndh-1 Subunit 6
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 9
Chain: 9, O
Synonym: Nadh Dehydrogenase I Subunit 9,Ndh-1 Subunit 9
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 15
Chain: 7, I
Synonym: Nadh Dehydrogenase I Chain 15,Ndh-1 Subunit 15
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 16
Chain: W, X

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 7
Chain: A, P
Synonym: Nadh Dehydrogenase I Chain 7,Ndh-1 Subunit 7
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 10
Chain: J, R
Synonym: Nadh Dehydrogenase I Chain 10,Ndh-1 Subunit 10
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 11
Chain: K, S
Synonym: Nadh Dehydrogenase I Chain 11,Ndh-1 Subunit 11
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 12
Chain: L, T
Synonym: Nadh Dehydrogenase I Chain 12,Ndh-1 Subunit 12
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 13
Chain: M, U
Synonym: Nadh Dehydrogenase I Chain 13,Ndh-1 Subunit 13
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 14
Chain: N, V
Synonym: Nadh Dehydrogenase I Chain 14,Ndh-1 Subunit 14
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852

Molecule: Nadh-Quinone Oxidoreductase Subunit 8
Chain: H, Q
Synonym: Nadh Dehydrogenase I Subunit 8,Ndh-1 Subunit 8
Ec: 1.6.5.11

Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.110 341.450 263.890 90.00 100.52 90.00
method X-Ray Diffractionresolution 3.21 Å
ligand FES, FMN, NAI, SF4 enzyme Oxidoreductase E.C.1.6.5.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
1, B


2, C


3, D


6, G


7, I


A, P


E, 4


F, 5


N, V


O, 9


Q, H


S, K


T, M, L, J, R, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3100 Kb) [Save to disk]
  • Biological Unit Coordinates (6i1p.pdb1.gz) 1503 Kb
  • Biological Unit Coordinates (6i1p.pdb2.gz) 1508 Kb
  • LPC: Ligand-Protein Contacts for 6I1P
  • CSU: Contacts of Structural Units for 6I1P
  • Structure Factors (2604 Kb)
  • Retrieve 6I1P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I1P from S2C, [Save to disk]
  • View 6I1P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I1P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6i1p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i1p_T] [6i1p_E] [6i1p_I] [6i1p_U] [6i1p_A] [6i1p_B] [6i1p_L] [6i1p_3] [6i1p_S] [6i1p_D] [6i1p_9] [6i1p_V] [6i1p_G] [6i1p_5] [6i1p_Q] [6i1p_X] [6i1p_7] [6i1p_4] [6i1p_M] [6i1p_N] [6i1p_J] [6i1p_C] [6i1p_W] [6i1p_1] [6i1p_2] [6i1p_P] [6i1p_O] [6i1p_H] [6i1p_R] [6i1p_K] [6i1p_6] [6i1p_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I1P
  • Community annotation for 6I1P at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science