6I3Y Lipid Transport date Nov 08, 2018
title Crystal Structure Of The Human Mitochondrial Prelid1k58v-Tri Complex With Ps
authors X.Miliara, J.L.Berry, R.M.L.Morgan, S.J.Matthews
compound source
Molecule: Preli Domain-Containing Protein 1, Mitochondrial
Chain: C, F
Synonym: 25 Kda Protein Of Relevant Evolutionary And Lympho Interest,Px19-Like Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prelid1, Preli, Cgi-106, Sbbi12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Shuffle
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet_duet

Molecule: Tp53-Regulated Inhibitor Of Apoptosis 1
Chain: A, H
Synonym: Protein 15e1.1,Wf-1,P53-Inducible Cell-Survival Fa P53csv;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Triap1, 15e1.1, Hspc132
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Shuffle
Expression_system_plasmid: Prsf2
symmetry Space Group: P 63 2 2
R_factor 0.244 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.000 126.000 178.320 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.98 Å
ligand LMT, P5S enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C


H, A
  • phosphatidic acid transporte...


  • Primary referenceStructural determinants of lipid specificity within Ups/PRELI lipid transfer proteins., Miliara X, Tatsuta T, Berry JL, Rouse SL, Solak K, Chorev DS, Wu D, Robinson CV, Matthews S, Langer T, Nat Commun. 2019 Mar 8;10(1):1130. doi: 10.1038/s41467-019-09089-x. PMID:30850607
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (6i3y.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 6I3Y
  • CSU: Contacts of Structural Units for 6I3Y
  • Structure Factors (680 Kb)
  • Retrieve 6I3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I3Y from S2C, [Save to disk]
  • View 6I3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I3Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i3y_A] [6i3y_F] [6i3y_H] [6i3y_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I3Y
  • Community annotation for 6I3Y at PDBWiki (http://pdbwiki.org)

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