6IF3 Endocytosis date Sep 18, 2018
title Complex Structure Of Rab35 And Its Effector Acap2
authors L.Lin, J.Zhu, R.Zhang
compound source
Molecule: Arf-Gap With Coiled-Coil, Ank Repeat And Ph Domai Containing Protein 2;
Chain: A
Synonym: Centaurin-Beta-2,Cnt-B2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acap2, Centb2, Kiaa0041
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Ras-Related Protein Rab-35
Chain: B
Synonym: Gtp-Binding Protein Ray,Ras-Related Protein Rab-1c
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab35, Rab1c, Ray
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.741 53.468 144.008 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceRab35/ACAP2 and Rab35/RUSC2 Complex Structures Reveal Molecular Basis for Effector Recognition by Rab35 GTPase., Lin L, Shi Y, Wang M, Wang C, Zhu J, Zhang R, Structure. 2019 Mar 11. pii: S0969-2126(19)30078-4. doi:, 10.1016/j.str.2019.02.008. PMID:30905672
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (6if3.pdb1.gz) 118 Kb
  • CSU: Contacts of Structural Units for 6IF3
  • Structure Factors (1136 Kb)
  • Retrieve 6IF3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IF3 from S2C, [Save to disk]
  • View 6IF3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IF3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6if3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6if3_A] [6if3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IF3
  • Community annotation for 6IF3 at PDBWiki (http://pdbwiki.org)

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