6IGO Membrane Protein date Sep 25, 2018
title Crystal Structure Of Myelin Protein Zero-Like Protein 1 (Mpz
authors T.Yu
compound source
Molecule: Myelin Protein Zero-Like Protein 1
Chain: C, A, B, D, E, F
Fragment: Unp Residues 36-162
Synonym: Protein Zero-Related
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpzl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.462 121.703 70.395 90.00 100.24 90.00
method X-Ray Diffractionresolution 2.75 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural and biochemical studies of the extracellular domain of Myelin protein zero-like protein 1., Yu T, Liang L, Zhao X, Yin Y, Biochem Biophys Res Commun. 2018 Dec 2;506(4):883-890. doi:, 10.1016/j.bbrc.2018.10.161. Epub 2018 Nov 2. PMID:30392906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (6igo.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (6igo.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (6igo.pdb3.gz) 35 Kb
  • CSU: Contacts of Structural Units for 6IGO
  • Structure Factors (220 Kb)
  • Retrieve 6IGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IGO from S2C, [Save to disk]
    • View 6IGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6IGO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6igo_E] [6igo_A] [6igo_B] [6igo_F] [6igo_D] [6igo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6IGO
  • Community annotation for 6IGO at PDBWiki (http://pdbwiki.org)

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