6II6 Toxin Protein Binding date Oct 03, 2018
title Crystal Structure Of The Makes Caterpillars Floppy (Mcf)-Lik Of Vibrio Vulnificus Mo6-24o In Complex With A Human Adp- Ribosylation Factor 3 (Arf3)
authors Y.Lee, B.S.Kim, S.Choi, E.Y.Lee, S.Park, J.Hwang, Y.Kwon, J.Hyun, C. S.H.Eom, M.H.Kim
compound source
Molecule: Putative Rtx-Toxin
Chain: A, B
Fragment: Mcf
Engineered: Yes
Mutation: Yes
Organism_scientific: Vibrio Vulnificus
Organism_taxid: 672
Gene: Rtxa1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Adp-Ribosylation Factor 3
Chain: C, D
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arf3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.293 117.523 186.348 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GTP, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (6ii6.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (6ii6.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6II6
  • CSU: Contacts of Structural Units for 6II6
  • Structure Factors (1948 Kb)
  • Retrieve 6II6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6II6 from S2C, [Save to disk]
  • View 6II6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6II6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ii6_B] [6ii6_D] [6ii6_A] [6ii6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6II6
  • Community annotation for 6II6 at PDBWiki (http://pdbwiki.org)

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