6J2E Immune System date Jan 01, 2019
title Crystal Structure Of Bat (Pteropus Alecto) Mhc Class I Ptal- Complex With Ebola Virus-Derived Peptide Ebov-Np1
authors D.Lu, K.F.Liu, C.Yue, Q.Lu, H.Cheng, Y.Chai, J.X.Qi, G.F.Gao, W.J.Li
compound source
Molecule: Mhc Class I Antigen
Chain: A, D
Engineered: Yes
 Organism_scientific: Pteropus Alecto
Organism_common: Black Flying Fox
Organism_taxid: 9402
Gene: Ptal-N
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12

Molecule: Beta-2-Microglobulin
Chain: B, E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12

Molecule: Ebov-Np1
Chain: C, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Ebola Virus Sp.
Organism_taxid: 205488
symmetry Space Group: C 2 2 21
R_factor 0.206 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.740 102.596 177.625 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (6j2e.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (6j2e.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 6J2E
  • Structure Factors (871 Kb)
  • Retrieve 6J2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J2E from S2C, [Save to disk]
    • View 6J2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6J2E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j2e_F] [6j2e_C] [6j2e_A] [6j2e_D] [6j2e_E] [6j2e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6J2E
  • Community annotation for 6J2E at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science