6JNN	Dna Binding Protein Dna	date	Mar 17, 2019
title	Ref6 Znf2-4-Nac004-Mc1 Complex
authors	Q.Q.Yao, B.X.Wu, J.B.Ma
compound		source
Molecule: Lysine-Specific Demethylase Ref6 Chain: A, B, N, G Synonym: Jumonji Domain-Containing Protein 12,Lysine-Specif Demethylase Ref6,Protein Relative Of Early Flowering 6; Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Ref6, Jmj12, Pkdm9a, At3g48430, T29h11_50 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Tptp(5cm)Ptpcptpgptptptptpg Chain: D, F, I, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Cpapapapapcpapgpapgpapa)-3' Chain: C, E, H, K Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 31	R_factor 0.251 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.969 70.969 141.076 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	5CM, ZN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (6jnn.pdb1.gz) 27 Kb Biological Unit Coordinates (6jnn.pdb2.gz) 26 Kb Biological Unit Coordinates (6jnn.pdb3.gz) 27 Kb Biological Unit Coordinates (6jnn.pdb4.gz) 27 Kb LPC: Ligand-Protein Contacts for 6JNN CSU: Contacts of Structural Units for 6JNN Structure Factors (679 Kb) Retrieve 6JNN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6JNN from S2C, [Save to disk]

View 6JNN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6JNN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6jnn_E] [6jnn_G] [6jnn_C] [6jnn_B] [6jnn_D] [6jnn_K] [6jnn_I] [6jnn_A] [6jnn_N] [6jnn_H] [6jnn_L] [6jnn_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6JNN

Community annotation for 6JNN at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---