6JUR Replication Dna date Apr 15, 2019
title Msdpo4-Dna Complex 5
authors D.T.Nair, M.K.Johnson
compound source
Molecule: Dna Polymerase Iv
Chain: A, F
Synonym: Pol Iv
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mycobacterium Smegmatis (Strain Atcc 7 Mc(2)155);
Organism_taxid: 246196
Strain: Atcc 700084 Mc(2)155
Variant: Atcc 700084 Mc(2)155
Gene: Dinb, Msmeg_1014, Msmeg_2294
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: C41de3

Molecule: Dna (5'-D(Tpcptpgpgpgpgptpcpcptpa)-3'
Chain: B, C, G, H
Engineered: Yes
Other_details: Dna Template
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.670 80.240 210.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand 2TM, MN enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A
  • DNA-directed DNA polymerase ...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (6jur.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (6jur.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 6JUR
  • CSU: Contacts of Structural Units for 6JUR
  • Structure Factors (2820 Kb)
  • Retrieve 6JUR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JUR from S2C, [Save to disk]
    • View 6JUR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JUR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jur_C] [6jur_H] [6jur_B] [6jur_G] [6jur_A] [6jur_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JUR
  • Community annotation for 6JUR at PDBWiki (http://pdbwiki.org)

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