6KIV Transcription Dna date Jul 20, 2019
title Cryo-Em Structure Of Human Mll1-Ubncp Complex (4.0 Angstrom)
authors J.Huang, H.Xue, T.Yao
compound source
Molecule: Histone H3
Chain: A, E
Engineered: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18002543mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: D, H
Synonym: H2b1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (145-Mer)
Chain: I
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (145-Mer)
Chain: J
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Histone-Lysine N-Methyltransferase 2a
Chain: K
Synonym: Lysine N-Methyltransferase 2a,All-1,Cxxc-Type Zinc Protein 7,Myeloidlymphoid Or Mixed-Lineage Leukemia,Myeloi Or Mixed-Lineage Leukemia Protein 1,Trithorax-Like Protein, Finger Protein Hrx;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2a, All1, Cxxc7, Hrx, Htrx, Mll, Mll1, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Retinoblastoma-Binding Protein 5
Chain: N
Synonym: Rbbp-5,Retinoblastoma-Binding Protein Rbq-3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp5, Rbq3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ubiquitin
Chain: O
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Set1ash2 Histone Methyltransferase Complex Subun
Chain: T
Synonym: Ash2-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash2l, Ash2l1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Wd Repeat-Containing Protein 5
Chain: R
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr5, Big3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand SAH, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


N


R


T


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]
  • Biological Unit Coordinates (6kiv.pdb1.gz) 402 Kb
  • LPC: Ligand-Protein Contacts for 6KIV
  • CSU: Contacts of Structural Units for 6KIV
  • Retrieve 6KIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KIV from S2C, [Save to disk]
    • View 6KIV in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6KIV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kiv_I] [6kiv_K] [6kiv_E] [6kiv_T] [6kiv_G] [6kiv_O] [6kiv_H] [6kiv_J] [6kiv_C] [6kiv_D] [6kiv_N] [6kiv_R] [6kiv_A] [6kiv_B] [6kiv_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6KIV
  • Community annotation for 6KIV at PDBWiki (http://pdbwiki.org)

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