6KIZ Transcription Dna date Jul 20, 2019
title Cryo-Em Structure Of Human Mll1-Ncp Complex, Binding Mode2
authors J.Huang, H.Xue, T.Yao
compound source
Molecule: Histone H3
Chain: A, E
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18002543mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: D, H
Synonym: H2b1.1
Engineered: Yes
Mutation: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (145-Mer)
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (145-Mer)
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Retinoblastoma-Binding Protein 5
Chain: N
Synonym: Rbbp-5,Retinoblastoma-Binding Protein Rbq-3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp5, Rbq3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone-Lysine N-Methyltransferase 2a
Chain: K
Synonym: Lysine N-Methyltransferase 2a,All-1,Cxxc-Type Zinc Protein 7,Myeloidlymphoid Or Mixed-Lineage Leukemia,Myeloi Or Mixed-Lineage Leukemia Protein 1,Trithorax-Like Protein, Finger Protein Hrx;
Ec: 2.1.1.43
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2a, All1, Cxxc7, Hrx, Htrx, Mll, Mll1, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Wd Repeat-Containing Protein 5
Chain: R
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr5, Big3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Set1ash2 Histone Methyltransferase Complex Subun
Chain: T
Synonym: Ash2-Like Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash2l, Ash2l1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
ligand SAH, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


N


R


T


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (403 Kb) [Save to disk]
  • Biological Unit Coordinates (6kiz.pdb1.gz) 393 Kb
  • LPC: Ligand-Protein Contacts for 6KIZ
  • CSU: Contacts of Structural Units for 6KIZ
  • Retrieve 6KIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KIZ from S2C, [Save to disk]
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  • Visual 3D analysis of 6KIZ
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6kiz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kiz_T] [6kiz_D] [6kiz_J] [6kiz_G] [6kiz_E] [6kiz_K] [6kiz_I] [6kiz_R] [6kiz_H] [6kiz_N] [6kiz_B] [6kiz_C] [6kiz_F] [6kiz_A]
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  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KIZ
  • Community annotation for 6KIZ at PDBWiki (http://pdbwiki.org)

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