6KN0 Immune System date Aug 02, 2019
title Caspase-1 P20p10 C285a In Complex With Human Gsdmd-C Domain
authors J.Ding, Q.Sun
compound source
Molecule: Caspase-1
Chain: A, C
Synonym: Casp-1,Interleukin-1 Beta Convertase,Il-1bc,Interl Beta-Converting Enzyme,Il-1 Beta-Converting Enzyme,P45;
Ec: 3.4.22.36
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp1, Il1bc, Il1bce
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Psumo

Molecule: Caspase-1
Chain: B, D
Synonym: Casp-1,Interleukin-1 Beta Convertase,Il-1bc,Interl Beta-Converting Enzyme,Il-1 Beta-Converting Enzyme,P45;
Ec: 3.4.22.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp1, Il1bc, Il1bce
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet21a

Molecule: Gasdermin-D
Chain: E, F
Synonym: Gasdermin Domain-Containing Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsdmd, Dfna5l, Gsdmdc1, Fksg10
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Psumo
symmetry Space Group: C 1 2 1
R_factor 0.240 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.039 94.894 76.081 90.00 116.43 90.00
method X-Ray Diffractionresolution 2.79 Å
ligand
enzyme Hydrolase E.C.3.4.22.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (6kn0.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (6kn0.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 6KN0
  • Structure Factors (623 Kb)
  • Retrieve 6KN0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KN0 from S2C, [Save to disk]
    • View 6KN0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6KN0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kn0_B] [6kn0_C] [6kn0_F] [6kn0_D] [6kn0_E] [6kn0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6KN0
  • Community annotation for 6KN0 at PDBWiki (http://pdbwiki.org)

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