6KN9 Cytokine date May 18, 2018
title Crystal Structure Of Human Interleukin 18 Receptor Beta Extr Domain In Complex With An Antagonistic Scfv
authors D.H.Wu, C.C.Liu
compound source
Molecule: Interleukin-18 Receptor Accessory Protein
Chain: A, B, C
Fragment: Extracellular Domain
Synonym: Il-18racp,Accessory Protein-Like,Acpl,Cd218 Antige Family Member B,Cdw218b,Il-1r Accessory Protein-Like,Il-1ra Interleukin-1 Receptor 7,Il-1r7,Interleukin-18 Receptor Acc Protein-Like,Interleukin-18 Receptor Beta,Il-18rbeta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il18rap, Il1r7
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
Expression_system_vector_type: Vector
Expression_system_vector: Ptie1

Molecule: Scfv
Chain: D, E, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 31
R_factor 0.247 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.160 163.160 64.145 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (6kn9.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (6kn9.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (6kn9.pdb3.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 6KN9
  • CSU: Contacts of Structural Units for 6KN9
  • Structure Factors (223 Kb)
  • Retrieve 6KN9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KN9 from S2C, [Save to disk]
  • View 6KN9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KN9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kn9_C] [6kn9_D] [6kn9_F] [6kn9_A] [6kn9_E] [6kn9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KN9
  • Community annotation for 6KN9 at PDBWiki (http://pdbwiki.org)

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