6KQP Transferase date Aug 18, 2019
title Nsd1 Set Domain In Complex With Sam
authors H.J.Cho, T.Cierpicki
compound source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-36 Lysine-20 Specific;
Chain: A
Synonym: Androgen Receptor Coactivator 267 Kda Protein,Andr Receptor-Associated Protein Of 267 Kda,H3-K36-Hmtase,H4-K20 Lysine N-Methyltransferase 3b,Nuclear Receptor-Binding Set Containing Protein 1,Nr-Binding Set Domain-Containing Prote
Ec: 2.1.1.357
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsd1, Ara267, Kmt3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.194 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.649 91.649 60.582 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand SAM, ZN enzyme Transferase E.C.2.1.1.357 BRENDA
Primary referenceCovalent inhibition of NSD1 histone methyltransferase., Huang H, Howard CA, Zari S, Cho HJ, Shukla S, Li H, Ndoj J, Gonzalez-Alonso P, Nikolaidis C, Abbott J, Rogawski DS, Potopnyk MA, Kempinska K, Miao H, Purohit T, Henderson A, Mapp A, Sulis ML, Ferrando A, Grembecka J, Cierpicki T, Nat Chem Biol. 2020 Aug 31. pii: 10.1038/s41589-020-0626-6. doi:, 10.1038/s41589-020-0626-6. PMID:32868895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (6kqp.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 6KQP
  • CSU: Contacts of Structural Units for 6KQP
  • Structure Factors (285 Kb)
  • Retrieve 6KQP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KQP from S2C, [Save to disk]
  • View 6KQP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KQP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kqp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KQP
  • Community annotation for 6KQP at PDBWiki (http://pdbwiki.org)

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